In Observance of U.S. Holiday, M.L.K. Day, Agilent Cross Lab/ iLab Operations Software Support Help Desk will be closed during U.S. hours on Monday January 18th, 2021. We will resume regular U.S. support hours on Tuesday January 19th, 2021. EU and APAC Support will remain open during this time. For urgent matters, please add "Urgent" to the ticket/ email subject or press "1", when prompted, to escalate a call on the iLab Support phone and we will prioritize those requests first.
The Bioinformatics Shared Resource supports all stages of a project, ranging from experimental design to analysis and publication of these data and development of grant applications. The BISR staff work individually with researchers to select the data analysis approach that would help answer the research question, with the ultimate goal of creating testable hypotheses and making fundamental new discoveries in cancer research. The Bioinformatics Shared Resource can help with a variety of analyses, including: 1) analysis of transriptomic, proteomic and other high-throughput data types, 2) analysis of cancer molecular and clinical data from public databases including NIH-TCGA, CCLE, GDSC, NIH-LINCS, and GEO, and 3) data integration and hypothesis generation through network analysis and pathway enrichment.
The Behavioral Measurement and Interventions Shared Resource (BMISR) has more than 25 years of experience providing support to UACC members and other University and national researchers studying human lifestyle behaviors related to cancer prevention and control, including diet, physical activity, tobacco exposure, quality of life, sun-safety, sleep and symptom management. BMISR is a unique "one stop" resource that provides investigators one access point to several research services ranging from study design consultation to intervention delivery to data analysis.
The Genomics Shared Service (GSS): analysis of DNA and RNA from single genes to whole genome and metagenomic samples.
If you're unsure of how to get started, request the "Start a Project" service.
Services:
The Biostatistics Shared Resource (BSR) ensures excellent and timely biostatistical support in the design, development and analysis for all members of the University of Arizona Cancer Center (UACC). The BSR provides efficient statistical design, accurate and organized data, and appropriate data analyses and interpretation to enable UACC investigators to achieve their scientific goals. This support is facilitated by a team approach and the long-term dedicated involvement of specific BSR personnel embedded within all four of the UACC scientific programs. The BSR brings together a group of 10 individuals with specific expertise in biostatistics, clinical trials, statistical computing, and statistical database applications. BSR faculty and staff are collaboratively involved in the conception, design, implementation, analysis, and reporting of laboratory, translational, clinical and population-based research conducted in the UACC.
Services Provided:
Megha Padi, Ph.D. BISR Director mpadi@email.arizona.edu
Lois J. Loescher, Ph.D. BMISR Co-Director loescher@email.arizona.edu
Cynthia Thomson, Ph.D. BMISR Co-Director thomson@email.arizona.edu
George Watts, Ph.D. Genomic Co-Director gwatts@email.arizona.edu
Denise J. Roe, DrPH Professor, Director BSR droe@email.arizona.edu
Hours: | Location: |
BMISR: Monday-Friday 8AM-5PM
BSR: Monday -Friday 8:30AM-5:30PM
Genomics: Monday-Friday 8:00AM-5:30PM |
Bioinformatics Shared Resource: UACC 1st Floor
Behavioral Measurement and Interventions Shared Resource: 3950 S. Country Club Rd Suite 330 Tucson, AZ. 85714
Genomics Shared Service: Room 3933, The University of Arizona Cancer Center 1515 N. Campbell Ave.Tucson AZ 85724
BSR:
1515 N. Campbell Avenue Tucson, AZ 85724 |
Name | Role | Phone | Location | |
---|---|---|---|---|
Megha Padi |
Bioinformatics Shared Resource Director
|
520-626-8003
|
mpadi@email.arizona.edu
|
|
Angela Yung |
BMISR Operations Manager
|
520-626-8316
|
ayung@email.arizona.edu
|
|
George Watts |
Genomics Co-Director
|
520-626-4724
|
gwatts@email.arizona.edu
|
Room 3921 UACC
|
Denise J. Roe, DrPH |
Professor, Director, BSR
|
520-626-2281
|
droe@email.arizona.edu
|
Room 1933 UACC
|
Angela Wakeham |
Program Coord. Sr.
|
520-626-2077
|
awakeham@email.arizona.edu
|
Room 1930 UACC
|
Service list |
► THE GENOMICS CORE (11) | |||
Name | Description | Price | |
---|---|---|---|
Start a Project |
If you're unsure of what you need, this is the place to get started:
|
Internal
$0.00
each
|
|
Next Gen sequencing: Ion Torrent PGM |
Applications: sequencing amplicons, gene panels, 16S rRNA, constructs, shotgun sequencing small genomes |
Internal
$300.00
each
|
|
Next Gen sequencing: Ion Torrent Proton |
Applications: whole exome, transcriptome. shotgun sequencing metagenomes |
Internal
$750.00
each
|
|
Affymetrix Array Hybridization |
Affymetrix GeneChip analysis of RNA and DNA for whole transcriptome and genotyping. |
Internal
$310.00
each
|
|
RNA/DNA isolation |
Isolation of RNA and DNA from most sample types: fresh, frozen, FFPE, cfDNA, blood, sputum, swab, tissue, environmental, etc. Whether you have only a few cells, or FFPE tissue, or a complex sample mixture requiring host DNA removal, the GSS can provide RNA or DNA extraction. |
Internal
$150.00
each
|
|
real time quantitative PCR/RT-PCR |
Applied Biosystems TaqMan assays for gene expression, genotyping, mutation detection |
Internal
$15.00
each
|
|
qPCR : Self-service |
Flat fee/per plate for self-run analyses on our Applied Biosystems qPCR instruments. |
Internal
$50.00
plate
|
|
Agilent Bioanalyzer RNA/DNA Quality Control |
DNA and RNA qualitation and quantitation using the Agilent Bioanalyzer 2100 |
Internal
$75.00
each
|
|
NanoDrop RNA/DNA Quality Control: |
Spectrophotometric analysis of RNA and DNA quantity and purity. |
Internal
$12.00
each
|
|
qPCR RNA/DNA Quality Control |
qPCR based analysis of RNA or DNA quantity and quality. Useful for assessing FFPE and metegenomic samples. |
Internal
$15.00
each
|
|
Qubit: RNA/DNA Quality Control: |
Fluorimetric quantitation of nucleic acids. |
Internal
$12.00
each
|